from smithWaterman import DynAlign
from Bio.SeqRecord import SeqRecord
from Bio.Seq import Seq
from Bio.SubsMat import MatrixInfo

seq1 = SeqRecord(Seq("ACTGA"), id="mojeid1")
seq2 = SeqRecord(Seq("ACTTGACGAA"))

print DynAlign(seq1, seq2, MatrixInfo.blosum62, -1)

